B. W. Tresca, O. B. B., L. N. Zakharov, D. W. Johnson and M. M. Haley, Anion-Directed Self-Assembly of a 2,6-Bis(2-anilinoethynyl)pyridine Amide Scaffold. Supramol. Chem. 2016, 28, 37-44.

Brown, N. M.; Mueller, R. S.; Shepardson, J. W.; Landry, Z. C.; Morre, J. T.; Maier, C. S.; Hardy, F. J.;Dreher, T. W., Structural and functional analysis of the finished genome of the recently isolated toxic Anabaena sp. WA102. BMC Genomics 2016, 17 (1), 457.

Chinison, J. J.; Danelishvili, L.; Gupta, R.; Rose, S. J.; Babrak, L. M.;Bermudez, L. E., Identification of Mycobacterium avium subsp. hominissuis secreted proteins using an in vitro system mimicking the phagosomal environment. BMC Microbiol 2016, 16 (1), 270.

Fabilane, C. S.; Nguyen, P. N.; Hernandez, R. V.; Nirudodhi, S.; Duong, M.; Maier, C. S.;Narayanaswami, V., Mechanism of Lipid Binding of Human Apolipoprotein E3 by Hydrogen/Deuterium Exchange/Mass Spectrometry and Fluorescence Polarization. Protein and peptide letters 2016, 23 (4), 404-13.

Hammers, M. D.; Singh, L.; Montoya, L. A.; Moghaddam, A. D.;Pluth, M. D., Synthesis of Amino-ADT Provides Access to Hydrolytically Stable Amide-Coupled Hydrogen Sulfide Releasing Drug Targets. Synlett : accounts and rapid communications in synthetic organic chemistry 2016, 27 (9), 1349-1353.

Huang, L.; Wickramasekara, S. I.; Akinyeke, T.; Stewart, B. S.; Jiang, Y.; Raber, J.;Maier, C. S., Ion mobility-enhanced MS(E)-based label-free analysis reveals effects of low-dose radiation post contextual fear conditioning training on the mouse hippocampal proteome. Journal of proteomics 2016, 140, 24-36.

J. L. Marshall, K. U., C. K. Frederickson, C. Schütt, A. M. Zeidell, K. P. Goetz, T. W. Finn, K. Jarolimek, L. N. Zakharov, C. Risko, R. Herges, O. D. Jurchescu and M. M. Haley, Indacenodibenzothiophenes: Synthesis, Optoelectronic Properties and Materials Applications of Molecules with Strong Antiaromatic Character. Chem. Sci. 2016, 7, 5547-5558.

Johnson, L. A.; Zuloaga, K. L.; Kugelman, T. L.; Mader, K. S.; Morre, J. T.; Zuloaga, D. G.; Weber, S.; Marzulla, T.; Mulford, A.; Button, D.; Lindner, J. R.; Alkayed, N. J.; Stevens, J. F.;Raber, J., Amelioration of Metabolic Syndrome-Associated Cognitive Impairments in Mice via a Reduction in Dietary Fat Content or Infusion of Non-Diabetic Plasma. EBioMedicine 2016, 3, 26-42.

Kang, J. Y.; Johnston, R. C.; Snyder, K. M.; Cheong, P. H.;Carter, R. G., Construction of Stereogenic alpha,alpha-Disubstituted Cycloalkanones via 1 degrees Amine Thiourea Dual Catalysis: Experimental Scope and Computational Analyses. The Journal of organic chemistry 2016, 81 (9), 3629-37.

Kirkwood, J. S.; Miranda, C. L.; Bobe, G.; Maier, C. S.;Stevens, J. F., 18O-Tracer Metabolomics Reveals Protein Turnover and CDP-Choline Cycle Activity in Differentiating 3T3-L1 Pre-Adipocytes. PLoS One 2016, 11 (6), e0157118.

Kuhn, N.; Serrano, A.; Abello, C.; Arce, A.; Espinoza, C.; Gouthu, S.; Deluc, L.;Arce-Johnson, P., Regulation of polar auxin transport in grapevine fruitlets (Vitis vinifera L.) and the proposed role of auxin homeostasis during fruit abscission. BMC plant biology 2016, 16 (1), 234.

Marshall, J. L.; O'Neal, N. J.; Zakharov, L. N.;Haley, M. M., Synthesis and Characterization of Two Unsymmetrical Indenofluorene Analogues: Benzo[5,6]-s-indaceno[1,2-b]thiophene and Benzo[5,6]-s-indaceno[2,1-b]thiophene. The Journal of organic chemistry 2016, 81 (9), 3674-80.

McDougall, M. Q.; Choi, J.; Stevens, J. F.; Truong, L.; Tanguay, R. L.;Traber, M. G., Lipidomics and H2(18)O labeling techniques reveal increased remodeling of DHA-containing membrane phospholipids associated with abnormal locomotor responses in alpha-tocopherol deficient zebrafish (danio rerio) embryos. Redox biology 2016, 8, 165-74.

Miranda, C. L.; Elias, V. D.; Hay, J. J.; Choi, J.; Reed, R. L.;Stevens, J. F., Xanthohumol improves dysfunctional glucose and lipid metabolism in diet-induced obese C57BL/6J mice. Archives of biochemistry and biophysics 2016, 599, 22-30.

Mohamed F. EI-Mansy, J. Y. K., Rajinikanth Lingampally, Rich G. Carter, Proline Sulfonamide-Catalyzed, Domino Process for Asymmetric Synthesis of Amino- and Hydroxy-Substituted Bicyclo[2.2.2]octanes. EurJOC 2016, 1.

Rudebusch, G. E.; Espejo, G. L.; Zafra, J. L.; Pena-Alvarez, M.; Spisak, S. N.; Fukuda, K.; Wei, Z.; Nakano, M.; Petrukhina, M. A.; Casado, J.;Haley, M. M., A Biradical Balancing Act: Redox Amphoterism in a Diindenoanthracene Derivative Results from Quinoidal Acceptor and Aromatic Donor Motifs. Journal of the American Chemical Society 2016, 138 (38), 12648-54.

Rudebusch, G. E.; Zafra, J. L.; Jorner, K.; Fukuda, K.; Marshall, J. L.; Arrechea-Marcos, I.; Espejo, G. L.; Ponce Ortiz, R.; Gomez-Garcia, C. J.; Zakharov, L. N.; Nakano, M.; Ottosson, H.; Casado, J.;Haley, M. M., Diindeno-fusion of an anthracene as a design strategy for stable organic biradicals. Nature chemistry 2016, 8 (8), 753-9.

Saha, M.; Li, X.; Collett, N. D.;Carter, R. G., Unified Synthesis of 10-Oxygenated Lycopodium Alkaloids: Impact of C10-Stereochemistry on Reactivity. The Journal of organic chemistry 2016, 81 (14), 5963-80.

Stevens, J. F.;Maier, C. S., The Chemistry of Gut Microbial Metabolism of Polyphenols. Phytochemistry reviews : proceedings of the Phytochemical Society of Europe 2016, 15 (3), 425-444.

Tzeng, S. C.;Maier, C. S., Label-Free Proteomics Assisted by Affinity Enrichment for Elucidating the Chemical Reactivity of the Liver Mitochondrial Proteome toward Adduction by the Lipid Electrophile 4-hydroxy-2-nonenal (HNE). Frontiers in chemistry 2016, 4, 2.

Vonnegut, C. L.; Shonkwiler, A. M.; Zakharov, L. N.; Haley, M. M.;Johnson, D. W., Harnessing solid-state packing for selective detection of chloride in a macrocyclic anionophore. Chem Commun (Camb) 2016, 52 (61), 9506-9.

Watanabe, K.; Li, J.; Veerasamy, N.; Ghosh, A.;Carter, R. G., Stereoselective, Ag-Catalyzed Cyclizations To Access Polysubstituted Pyran Ring Systems: Synthesis of C1-C12 Subunit of Madeirolide A. Organic letters 2016, 18 (8), 1744-7.

Wattanasiritham, L.; Theerakulkait, C.; Wickramasekara, S.; Maier, C. S.;Stevens, J. F., Isolation and identification of antioxidant peptides from enzymatically hydrolyzed rice bran protein. Food chemistry 2016, 192, 156-62.

Williams, J. R.; Trias, E.; Beilby, P. R.; Lopez, N. I.; Labut, E. M.; Bradford, C. S.; Roberts, B. R.; McAllum, E. J.; Crouch, P. J.; Rhoads, T. W.; Pereira, C.; Son, M.; Elliott, J. L.; Franco, M. C.; Estevez, A. G.; Barbeito, L.;Beckman, J. S., Copper delivery to the CNS by CuATSM effectively treats motor neuron disease in SOD(G93A) mice co-expressing the Copper-Chaperone-for-SOD. Neurobiology of disease 2016, 89, 1-9.

Yang, L.; Broderick, D.; Campbell, Y.; Gombart, A. F.; Stevens, J. F.; Jiang, Y.; Hsu, V. L.; Bisson, W. H.;Maier, C. S., Conformational modulation of the farnesoid X receptor by prenylflavonoids: Insights from hydrogen deuterium exchange mass spectrometry (HDX-MS), fluorescence titration and molecular docking studies. Biochim Biophys Acta 2016, 1864 (12), 1667-1677.

Zhang, Z.; Atwell, L. L.; Farris, P. E.; Ho, E.;Shannon, J., Associations between cruciferous vegetable intake and selected biomarkers among women scheduled for breast biopsies. Public health nutrition 2016, 19 (7), 1288-95.


Atwell, L. L.; Hsu, A.; Wong, C. P.; Stevens, J. F.; Bella, D.; Yu, T. W.; Pereira, C. B.; Lohr, C. V.; Christensen, J. M.; Dashwood, R. H.; Williams, D. E.; Shannon, J.;Ho, E., Absorption and chemopreventive targets of sulforaphane in humans following consumption of broccoli sprouts or a myrosinase-treated broccoli sprout extract. Mol Nutr Food Res 2015, 59 (3), 424-33.

Axton, E. R.; Hardardt, E. A.;Stevens, J. F., Stable isotope-assisted LC-MS/MS monitoring of glyceryl trinitrate bioactivation in a cell culture model of nitrate tolerance. Journal of chromatography. B, Analytical technologies in the biomedical and life sciences




B. W. Tresca, O. B. B., L. N. Zakharov, D. W. Johnson and M. M. Haley, Anion-Directed Self-Assembly of a 2,6-Bis(2-anilinoethynyl)pyridine Amide Scaffold. Supramol. Chem. 2016, 28, 37-44.

Babrak, L.; Danelishvili, L.; Rose, S. J.;Bermudez, L. E., Microaggregate-associated protein involved in invasion of epithelial cells by Mycobacterium avium subsp. hominissuis. Virulence 2015, 6 (7), 694-703.

Babrak, L.; Danelishvili, L.; Rose, S. J.; Kornberg, T.;Bermudez, L. E., The environment of "Mycobacterium avium subsp. hominissuis" microaggregates induces synthesis of small proteins associated with efficient infection of respiratory epithelial cells. Infection and immunity 2015, 83 (2), 625-36.

Bailey, T. S.;Pluth, M. D., Reactions of isolated persulfides provide insights into the interplay between H2S and persulfide reactivity. Free radical biology & medicine 2015, 89, 662-7.

Berryman, O. B.; Johnson, C. A., 2nd; Vonnegut, C. L.; Fajardo, K. A.; Zakharov, L. N.; Johnson, D. W.;Haley, M. M., Solid-State Examination of Conformationally Diverse Sulfonamide Receptors Based on Bis(2-anilinoethynyl)pyridine, -Bipyridine, and -Thiophene. Crystal growth & design 2015, 15 (3), 1502-1511.

Choi, J.; Leonard, S. W.; Kasper, K.; McDougall, M.; Stevens, J. F.; Tanguay, R. L.;Traber, M. G., Novel function of vitamin E in regulation of zebrafish (Danio rerio) brain lysophospholipids discovered using lipidomics. J Lipid Res 2015, 56 (6), 1182-90.

De-Eknamkul, W.; Umehara, K.;Stevens, J. F., Flavonoids: separation and quantitation. TheScientificWorldJournal 2015, 2015, 874148.

Diaz-Gonzalez, F.; Milano, M.; Olguin-Araneda, V.; Pizarro-Cerda, J.; Castro-Cordova, P.; Tzeng, S. C.; Maier, C. S.; Sarker, M. R.;Paredes-Sabja, D., Protein composition of the outermost exosporium-like layer of Clostridium difficile 630 spores. Journal of proteomics 2015, 123, 1-13.

Elie, M. R.; Choi, J.; Nkrumah-Elie, Y. M.; Gonnerman, G. D.; Stevens, J. F.;Tanguay, R. L., Metabolomic analysis to define and compare the effects of PAHs and oxygenated PAHs in developing zebrafish. Environmental research 2015, 140, 502-10.

Hammers, M. D.; Taormina, M. J.; Cerda, M. M.; Montoya, L. A.; Seidenkranz, D. T.; Parthasarathy, R.;Pluth, M. D., A Bright Fluorescent Probe for H2S Enables Analyte-Responsive, 3D Imaging in Live Zebrafish Using Light Sheet Fluorescence Microscopy. Journal of the American Chemical Society 2015, 137 (32), 10216-23.

Harper, T. A., Jr.; Morre, J.; Lauer, F. T.; McQuistan, T. J.; Hummel, J. M.; Burchiel, S. W.;Williams, D. E., Analysis of dibenzo[def,p]chrysene-deoxyadenosine adducts in wild-type and cytochrome P450 1b1 knockout mice using stable-isotope dilution UHPLC-MS/MS. Mutation research. Genetic toxicology and environmental mutagenesis 2015, 782, 51-6.

Humpf, H. U.; Schneider, C.;Stevens, J. F., Scoping dietary supplements versus botanical medicines. Mol Nutr Food Res 2015, 59 (1), 5-6.

J. L. Marshall, G. E. R., L. N. Zakharov and M. M. Haley, Synthesis and Properties of Fully Conjugated Indacenediselenophene and Diindenoselenophene Derivatives. Tetrahedron Lett. 2015, 56, 3235-3239.

Khalifa, M. M.; Bodner, M. J.; Berglund, J. A.;Haley, M. M., Synthesis of N-substituted aryl amidines by strong base activation of amines. Tetrahedron letters 2015, 56 (27), 4109-4111.

Montezano, D.; Meek, L.; Gupta, R.; Bermudez, L. E.;Bermudez, J. C., Flux Balance Analysis with Objective Function Defined by Proteomics Data-Metabolism of Mycobacterium tuberculosis Exposed to Mefloquine. PLoS One 2015, 10 (7), e0134014.

Montoya, L. A.; Shen, X.; McDermott, J. J.; Kevil, C. G.;Pluth, M. D., Mechanistic investigations reveal that dibromobimane extrudes sulfur from biological sulfhydryl sources other than hydrogen sulfidedaggerElectronic supplementary information (ESI) available: Experimental details, pH stability data for BTE, NMR spectra. See DOI: 10.1039/c4sc01875cClick here for additional data file. Chem Sci 2015, 6 (1), 294-300.

Roemeling, M. D.; Williams, J.; Beckman, J. S.;Hurst, J. K., Imidazole catalyzes chlorination by unreactive primary chloramines. Free radical biology & medicine 2015, 82, 167-78.

Siboni, R. B.; Bodner, M. J.; Khalifa, M. M.; Docter, A. G.; Choi, J. Y.; Nakamori, M.; Haley, M. M.;Berglund, J. A., Biological Efficacy and Toxicity of Diamidines in Myotonic Dystrophy Type 1 Models. J Med Chem 2015, 58 (15), 5770-80.

Sommer, S. K.; Henle, E. A.; Zakharov, L. N.;Pluth, M. D., Selection for a Single Self-Assembled Macrocycle from a Hybrid Metal-Ligand Hydrogen-Bonded (MLHB) Ligand Subunit. Inorganic chemistry 2015, 54 (14), 6910-6.

Sommer, S. K.; Zakharov, L. N.;Pluth, M. D., Design, synthesis, and characterization of hybrid metal-ligand hydrogen-bonded (MLHB) supramolecular architectures. Inorganic chemistry 2015, 54 (4), 1912-8.

Tresca, B. W.; Hansen, R. J.; Chau, C. V.; Hay, B. P.; Zakharov, L. N.; Haley, M. M.;Johnson, D. W., Substituent Effects in CH Hydrogen Bond Interactions: Linear Free Energy Relationships and Influence of Anions. Journal of the American Chemical Society 2015, 137 (47), 14959-67.

Voinov, V. G.; Hoffman, P. D.; Bennett, S. E.; Beckman, J. S.;Barofsky, D. F., Electron Capture Dissociation of Sodium-Adducted Peptides on a Modified Quadrupole/Time-of-Flight Mass Spectrometer. J Am Soc Mass Spectrom 2015, 26 (12), 2096-104.

Vonnegut, C. L.; Shonkwiler, A. M.; Khalifa, M. M.; Zakharov, L. N.; Johnson, D. W.;Haley, M. M., Facile Synthesis and Properties of 2-lambda(5)-Phosphaquinolines and 2-lambda(5)-Phosphaquinolin-2-ones. Angew Chem Int Ed Engl 2015, 54 (45), 13318-22.

Wang, X.; Chandrabose, R. S.; Chun, S. E.; Zhang, T.; Evanko, B.; Jian, Z.; Boettcher, S. W.; Stucky, G. D.;Ji, X., High Energy Density Aqueous Electrochemical Capacitors with a KI-KOH Electrolyte. ACS applied materials & interfaces 2015, 7 (36), 19978-85.

Watson, G. W.; Wickramasekara, S.; Fang, Y.; Maier, C. S.; Williams, D. E.; Dashwood, R. H.; Perez, V. I.;Ho, E., HDAC6 activity is not required for basal autophagic flux in metastatic prostate cancer cells. Exp Biol Med (Maywood) 2015.

Watson, G. W.; Wickramasekara, S.; Fang, Y.; Palomera-Sanchez, Z.; Maier, C. S.; Williams, D. E.; Dashwood, R. H.; Perez, V. I.;Ho, E., Analysis of autophagic flux in response to sulforaphane in metastatic prostate cancer cells. Mol Nutr Food Res 2015, 59 (10), 1954-61.

Watson, G. W.; Wickramasekara, S.; Maier, C. S.; Williams, D. E.; Dashwood, R. H.;Ho, E., Assessment of global proteome in LNCaP cells by 2D-RP/RP LC-MS/MS following sulforaphane exposure. EuPA open proteomics 2015, 9, 34-40.



Bailey, T. S.; Zakharov, L. N.;Pluth, M. D., Understanding hydrogen sulfide storage: probing conditions for sulfide release from hydrodisulfides. Journal of the American Chemical Society 2014, 136 (30), 10573-6.

Engle, J. M.; Singh, P. S.; Vonnegut, C. L.; Zakharov, L. N.; Johnson, D. W.;Haley, M. M., Synthesis and solid-state structures of a macrocyclic receptor based on the 2,6-bis(2-anilinoethynyl)pyridine scaffold. CrystEngComm 2014, 16 (18), 3703-3706

Frederickson, C. K.;Haley, M. M., Synthesis and optoelectronic properties of indeno[1,2-b]fluorene-6,12-dione donor-acceptor-donor triads. The Journal of organic chemistry 2014, 79 (22), 11241-5.

Hammers, M. D.;Pluth, M. D., Ratiometric measurement of hydrogen sulfide and cysteine/homocysteine ratios using a dual-fluorophore fragmentation strategy. Anal Chem 2014, 86 (14), 7135-40.

Humpf, H. U.; Schneider, C.;Stevens, J. F., Functional food--where do we go? Mol Nutr Food Res 2014, 58 (1), 5-6.

McGrath, J. M.;Pluth, M. D., Linear free energy relationships reveal structural changes in hydrogen-bonded host-guest interactions. The Journal of organic chemistry 2014, 79 (23), 11797-801.

McGrath, J. M.;Pluth, M. D., Understanding the effects of preorganization, rigidity, and steric interactions in synthetic barbiturate receptors. The Journal of organic chemistry 2014, 79 (2), 711-9.

Montoya, L. A.;Pluth, M. D., Hydrogen sulfide deactivates common nitrobenzofurazan-based fluorescent thiol labeling reagents. Anal Chem 2014, 86 (12), 6032-9.

Young, B. S.; Chase, D. T.; Marshall, J. L.; Vonnegut, C. L.; Zakharov, L. N.;Haley, M. M., Synthesis and Properties of Fully-Conjugated Indacenedithiophenes. Chem Sci 2014, 5 (3), 1008-1014.



Kirkwood, J. S., Legette, L. L., Miranda, C. L., Jiang, Y., and Stevens, J. F. (2013) A metabolomics-driven elucidation of the anti-obesity mechanisms of xanthohumol, The Journal of biological chemistry 288, 19000-19013.

Kirkwood, J. S., Maier, C., and Stevens, J. F. (2013) Simultaneous, untargeted metabolic profiling of polar and nonpolar metabolites by LC-Q-TOF mass spectrometry, Curr Protoc Toxicol Chapter 4, Unit4 39.

Lebold, K. M., Kirkwood, J. S., Taylor, A. W., Choi, J., Barton, C. L., Miller, G. W., La Du, J., Jump, D. B., Stevens, J. F., Tanguay, R. L., and Traber, M. G. (2013) Novel liquid chromatography-mass spectrometry method shows that vitamin E deficiency depletes arachidonic and docosahexaenoic acids in zebrafish (Danio rerio) embryos, Redox biology 2, 105-113.

Legette, L. L., Luna, A. Y., Reed, R. L., Miranda, C. L., Bobe, G., Proteau, R. R., and Stevens, J. F. (2013) Xanthohumol lowers body weight and fasting plasma glucose in obese male Zucker fa/fa rats, Phytochemistry 91, 236-241.

Legette, L. L., Reed, R. L., Murty, L., Maier, C. S., and Stevens, J. F. (2013) Application of Paper Strip Extraction in Combination with LC-MS-MS in Pharmacokinetics, Spectroscopy (Springf) - Current Trends in Mass Spectrometry 39, s18-s25.

McNamara M, Tzeng SC, Maier C, Wu M, Bermudez LE. (2013) Surface-exposed proteins of pathogenic mycobacteria and the role of Cu-Zn superoxide dismutase in macrophages and neutrophil survival. Proteome Sci. Nov 28;11(1):45.

Milovancev, M., Hilgart-Martiszus, I., McNamara, M. J., Goodall, C. P., Seguin, B., Bracha, S., and Wickramasekara, S. I. (2013) Comparative analysis of the surface exposed proteome of two canine osteosarcoma cell lines and normal canine osteoblasts, BMC veterinary research 9, 116.

Rhoads TW, Williams JR, Lopez NI, Morré JT, Bradford CS, Beckman JS. (2013) Using theoretical protein isotopic distributions to parse small-mass-difference post-translational modifications via mass spectrometry. J Am Soc Mass Spectrom. Vol. 24(1):115-24.

Wang Z, Kirkwood JS, Taylor AW, Stevens JF, Leid M, Ganguli-Indra G, Indra AK. (2013). Transcription Factor Ctip2 Controls Epidermal Lipid Metabolism and Regulates Expression of Genes Involved in Sphingolipid Biosynthesis during Skin Development. J Invest Dermatol. Mar;133(3):668-76.

Wickramasekara, S. I., Zandkarimi, F., Morre, J., Kirkwood, J., Legette, L., Jiang, Y., Gombart, A. F., Stevens, J. F., and Maier, C. S. (2013) Electrospray Quadrupole Travelling Wave Ion Mobility Time-of-Flight Mass Spectrometry for the Detection of Plasma Metabolome Changes Caused by Xanthohumol in Obese Zucker (fa/fa) Rats, Metabolites 3, 701-717.

Zandkarimi, F., Wickramasekara, S., Morre, J., Stevens J. F. and Maier, C. S. (2013) Electrospray ionization traveling wave ion mobility mass spectrometry for the analysis of plant phenolics: An approach for separation of regioisomers. Recent Advances in Phytochemistry. Vol. 34, 21-42.


Lorang J, Kidarsa T, Bradford CS, Gilbert B, Curtis M, Tzeng SC, Maier CS, Wolpert TJ. (2012) Tricking the guard: exploiting plant defense for disease susceptibility. Science.  2012 Nov 2;338(6107):659-62

Gouthu S, Skinkis PA, Morré J, Maier CS, Deluc LG. (2012) Berry nitrogen status altered by cover cropping: Effects on berry hormone dynamics, growth and amino acid composition of Pinot Noir. Food Chemistry, 135, 2012, 1-8

Jeknić Z, Morré JT, Jeknić S, Jevremović S, Subotić A, Chen TH. (2012). Cloning and functional characterization of a gene for capsanthin-capsorubin synthase from tiger lily (Lilium lancifolium Thunb. 'Splendens'). Plant Cell Physiol.  Nov;53 (11):1899-912

Kirkwood JS, Lebold KM, Miranda CL, Wright CL, Miller GW, Tanguay RL, Barton CL, Traber MG, Stevens JF. (2012).  Vitamin C deficiency activates the purine nucleotide cycle in zebrafish. J Biol Chem.  Feb 3;287(6):3833-41

Trumbull KA, McAllister D, Gandelman MM, Fung WY, Lew T, Brennan L, Lopez N, Morré J, Kalyanaraman B, Beckman JS. (2012). Diapocynin and apocynin administration fails to significantly extend survival in G93A SOD1 ALS mice. Neurobiol Dis. Jan;45 (1):137-44.

Han B, Hare M, Wickramasekara S, Fang Y, Maier CS. (2012). A comparative 'bottom up' proteomics strategy for the site-specific identification and quantification of protein modifications by electrophilic lipids.. J Proteomics. Oct 22;75(18):5724-33.

Zhang LJ, Vogel WK, Liu X, Topark-Ngarm A, Arbogast BL, Maier CS, Filtz TM, Leid M. (2012). Coordinated regulation of transcription factor Bcl11b activity in thymocytes by the mitogen-activated protein kinase (MAPK) pathways and protein sumoylation. J Biol Chem.  Aug 3;287(32):26971-88.

McNamara M, Tzeng SC, Maier C, Zhang L, Bermudez LE. (2012). Surface proteome of "Mycobacterium avium subsp. hominissuis" during the early stages of macrophage infection. Infect Immun. May;80(5):1868-80

Legette LL, Moreno Luna AY, Reed RL, Miranda CL, Bobe G, Proteau RR, Stevens JF. (2012) Xanthohumol lowers body weight and fasting plasma glucose in obese male Zucker fa/fa rats. (2012). Phytochemistry.  May 26

Legette L, Ma L, Reed RL, Miranda CL, Christensen JM, Rodriguez-Proteau R, Stevens JF. (2012). Pharmacokinetics of xanthohumol and metabolites in rats after oral and intravenous administration.   Mol Nutr Food Res.  Mar;56(3):466-74.

Zasada IA, Weiland JE, Reed RL, Stevens JF. (2012). Activity of meadowfoam (Limnanthes alba) seed meal glucolimnanthin degradation products against soilborne pathogens.  J Agric Food Chem.  Jan 11;60(1):339-45

Place BJ, Field JA.( 2012).  Identification of novel fluorochemicals in aqueous film-forming foams used by the US military. Environ Sci Technol. Jul 3;46(13):7120-7.

Marley K, Maier CS, Helfand SC. (2012). Phosphotyrosine enrichment identifies focal adhesion kinase and other tyrosine kinases for targeting in canine hemangiosarcoma. Vet Comp Oncol. Sep;10(3):214-22



Rhoads TW, Lopez NI, Zollinger DR, Morré JT, Arbogast BL, Maier CS, DeNoyer L, Beckman JS. ( 2011)  Measuring copper and zinc superoxide dismutase from spinal cord tissue using electrospray mass spectrometry. Anal Biochem.  Aug 1;415(1):52-8.

Kuiper HC, Stevens JF. (2011). LC-MS/MS quantitation of mercapturic acid conjugates of lipid peroxidation products as markers of oxidative stress. Curr Protoc Toxicol. Feb 1;Chapter 17:Unit17.14.2.

Kuiper HC, Bruno RS, Traber MG, Stevens JF. (2011).  Vitamin C supplementation lowers urinary levels of 4-hydroperoxy-2-nonenal metabolites in humans. Free Radic Biol Med.  Apr 1;50(7):848-53.

Wang J, Zhang J, Arbogast B, Maier CS. (2011). Tandem mass spectrometric characterization of thiol peptides modified by the chemoselective cationic sulfhydryl reagent (4-iodobutyl)triphenylphosphonium--effects of a cationic thiol derivatization on peptide fragmentation. J Am Soc Mass Spectrom.  Oct;22(10):1771-83

Han B, Gross H, McPhail KL, Goeger D, Maier CS, Gerwick WH. (2011). Wewakamide A and guineamide G, cyclic depsipeptides from the marine cyanobacteria Lyngbya semiplena and Lyngbya majuscula. J Microbiol Biotechnol. Sep;21(9):930-6

Stevens JF, Maier CS. (2011). Acrolein. Mol Nutr Food Res.  Sep;55(9):1275-6.

Wu J, Stevens JF, Maier CS. (2011).  Mass spectrometry-based quantification of myocardial protein adducts with acrolein in an in vivo model of oxidative stress. Mol Nutr Food Res. Sep;55(9):1401-10

Dreher TW, Brown N, Bozarth CS, Schwartz AD, Riscoe E, Thrash C, Bennett SE, Tzeng SC, Maier CS. (2011). A freshwater cyanophage whose genome indicates close relationships to photosynthetic marine cyanomyophages. Environ Microbiol. Jul;13(7):1858-74

Nirudodhi S, Parsonage D, Karplus PA, Poole LB, Maier CS. (2011). Conformational studies of the robust 2-Cys peroxiredoxin Salmonella typhimurium AhpC by solution phase hydrogen/deuterium (H/D) exchange monitored by electrospray ionization mass spectrometry. Int J Mass Spectrom.  Apr 30;302(1-3):93-100

Chavez JD, Wu J, Bisson W, Maier CS. (2011). Site-specific proteomic analysis of lipoxidation adducts in cardiac mitochondria reveals chemical diversity of 2-alkenal adduction. J Proteomics.  Oct 19;74(11):2417-29

Clarke JD, Riedl K, Bella D, Schwartz SJ, Stevens JF, Ho E. (2011). Comparison of isothiocyanate metabolite levels and histone deacetylase activity in human subjects consuming broccoli sprouts or broccoli supplement. J Agric Food Chem.  Oct 26;59(20):10955-63

Clarke JD, Hsu A, Riedl K, Bella D, Schwartz SJ, Stevens JF, Ho E. (2011).  Bioavailability and inter-conversion of sulforaphane and erucin in human subjects consuming broccoli sprouts or broccoli supplement in a cross-over study design. Pharmacol Res.  Nov;64(5):456-63

Clarke JD, Hsu A, Williams DE, Dashwood RH, Stevens JF, Yamamoto M, Ho E. (2011). Metabolism and tissue distribution of sulforaphane in Nrf2 knockout and wild-type mice. Pharm Res. Dec;28(12):3171-9

Traber MG, Stevens JF. (2011). Vitamins C and E: beneficial effects from a mechanistic perspective. Free Radic Biol Med. Sep 1;51(5):1000-13.

Voinov VG, Deinzer ML, Beckman JS, Barofsky DF. (2011). Electron capture, collision-induced, and electron capture-collision induced dissociation in Q-TOF. J Am Soc Mass Spectrom. 2011 Apr;22(4):607-11.

Sowell SM, Abraham PE, Shah M, Verberkmoes NC, Smith DP, Barofsky DF, Giovannoni SJ. (2011). Environmental proteomics of microbial plankton in a highly productive coastal upwelling system. ISME J. May;5(5):856-65.

Forsberg ND, Rodriguez-Proteau R, Ma L, Morré J, Christensen JM, Maier CS, Jenkins JJ, Anderson KA. (2011). Organophosphorus pesticide degradation product in vitro metabolic stability and time-course uptake and elimination in rats following oral and intravenous dosing. Xenobiotica.. May;41(5):422-9




Celius T, Pansoy A, Matthews J, Okey AB, Henderson MC, Krueger SK, Williams DE. (2010) Flavin-containing monooxygenase-3: induction by 3-methylcholanthrene and complex regulation by xenobiotic chemicals in hepatoma cells and mouse liver. Toxicol Appl Pharmacol.  Aug 15;247(1):60-9.

Peluso MR, Miranda CL, Hobbs DJ, Proteau RR, Stevens JF. (2010). Xanthohumol and related prenylated flavonoids inhibit inflammatory cytokine production in LPS-activated THP-1 monocytes: structure-activity relationships and in silico binding to myeloid differentiation protein-2 (MD-2).Planta Med.  Oct;76(14):1536-43.

Kuiper HC, Langsdorf BL, Miranda CL, Joss J, Jubert C, Mata JE, Stevens JF. (2010) Quantitation of mercapturic acid conjugates of 4-hydroxy-2-nonenal and 4-oxo-2-nonenal metabolites in a smoking cessation study. Free Radic Biol Med.  Jan 1;48(1):65-72.

Chavez JD, Bisson WH, Maier CS. (2010).  A targeted mass spectrometry-based approach for the identification and characterization of proteins containing α-aminoadipic and γ-glutamic semialdehyde residues.  Anal Bioanal Chem.  Dec;398(7-8):2905-14.

Maier CS, Chavez J, Wang J, Wu J. (2010). Protein adducts of aldehydic lipid peroxidation products identification and characterization of protein adducts using an aldehyde/keto-reactive probe in combination with mass spectrometry. Methods Enzymol. ;473:305-30.

Chavez J, Chung WG, Miranda CL, Singhal M, Stevens JF, Maier CS. (2010). Site-specific protein adducts of 4-hydroxy-2(E)-nonenal in human THP-1 monocytic cells: protein carbonylation is diminished by ascorbic acid. Chem Res Toxicol.  Jan;23(1):37-47.


Kesinger NG, Langsdorf BL, Yokochi AF, Miranda CL, Stevens JF. (2010). Formation of a vitamin C conjugate of acrolein and its paraoxonase-mediated conversion into 5,6,7,8-tetrahydroxy-4-oxooctanal. Chem Res Toxicol.  Apr 19;23(4):836-44.

Takata T, Smith JP, Arbogast B, David LL, Lampi KJ. (2010). Solvent accessibility of betaB2-crystallin and local structural changes due to deamidation at the dimer interface. Exp Eye Res.  Sep;91(3):336-46.

Stowell C, Wang L, Arbogast B, Lan JQ, Cioffi GA, Burgoyne CF, Zhou A. (2010). Retinal proteomic changes under different ischemic conditions - implication of an epigenetic regulatory mechanism. Int J Physiol Pathophysiol Pharmacol.  Jun 30;2(2):148-160.

Bythell BJ, Csonka IP, Suhai S, Barofsky DF, Paizs B. (2010). Gas-phase structure and fragmentation pathways of singly protonated peptides with N-terminal arginine. J Phys Chem B.  Nov 25;114(46):15092-105.

Shchukin PV, Muftakhov MV, Morré J, Deinzer ML, Vasil'ev YV. (2010). High resolution mass analysis of N- and C-terminal negative ions resulting from resonance electron capture by aliphatic amino acids. J Chem Phys.  Jun 21;132(23):234306

Kocisek J, Papp P, Mach P, Vasil'ev YV, Deinzer ML, Matejcík S. (2010). Resonance electron capture by serine. J Phys Chem A.  Feb 4;114(4):1677-83.

Veluthoor S, Li S, Kelsey RG, Dolan MC, Panella NA, Karchesy J. (2010) Two new diterpene phenols from Calocedrus decurrans. Nat Prod Commun.  Apr;5(4):519-22.



Miranda CL, Reed RL, Kuiper HC, Alber S, Stevens JF. (2009). Ascorbic acid promotes detoxification and elimination of 4-hydroxy-2(E)-nonenal in human monocytic THP-1 cells. Chem Res Toxicol.  May;22(5):863-74.

Stevens JF, Reed RL, Alber S, Pritchett L, Machado S. (2009). Herbicidal activity of glucosinolate degradation products in fermented meadowfoam ( Limnanthes alba ) seed meal. J Agric Food Chem.  Mar 11;57(5):1821-6.

Gómez LA, Monette JS, Chavez JD, Maier CS, Hagen TM. (2009). Supercomplexes of the mitochondrial electron transport chain decline in the aging rat heart. Arch Biochem Biophys.  Oct 1;490(1):30-5

Chung WG, Miranda CL, Stevens JF, Maier CS. (2009). Hop proanthocyanidins induce apoptosis, protein carbonylation, and cytoskeleton disorganization in human colorectal adenocarcinoma cells via reactive oxygen species. Food Chem Toxicol.  Apr;47(4):827-36

Yan X, Maier CS. (2009). Hydrogen/deuterium exchange mass spectrometry. Methods Mol Biol. ;492:255-71.

Kesinger NG, Stevens JF. (2009). Covalent interaction of ascorbic acid with natural products. Phytochemistry.  Dec;70(17-18):1930-9

Voinov VG, Beckman JS, Deinzer ML, Barofsky DF. (2009). Electron-capture dissociation (ECD), collision-induced dissociation (CID) and ECD/CID in a linear radio-frequency-free magnetic cell. Rapid Commun Mass Spectrom.  Sep;23(18):3028-30.

Voinov VG, Deinzer ML, Barofsky DF. (2009). Radio-frequency-free cell for electron capture dissociation in tandem mass spectrometry. Anal Chem.  Feb 1;81(3):1238-43.

Vasil'ev YV, Figard BJ, Morré J, Deinzer ML. (2009).  Fragmentation of peptide negative molecular ions induced by resonance electron capture. J Chem Phys.  Jul 28;131(4):044317.

Aminin DL, Koy C, Dmitrenok PS, Müller-Hilke B, Koczan D, Arbogast B, Silchenko AA, Kalinin VI, Avilov SA, Stonik VA, Collin PD, Thiesen HJ, Deinzer ML, Glocker MO. (2009). Immunomodulatory effects of holothurian triterpene glycosides on mammalian splenocytes determined by mass spectrometric proteome analysis. J Proteomics.  Jul 21;72(5):886-906

Scheri RC, Lee J, Barofsky DF, Curtis LR. (2009).  Chlordecone increased subcellular distribution of scavenger receptor class B type II to murine hepatic microsomes without altering cytosolic cholesterol binding proteins. Toxicol Lett.  Dec 1;191(1):20-5.

Harder ME, Malencik DA, Yan X, Broderick D, Leid M, Anderson SR, Deinzer ML, Schimerlik MI. (2009). Equilibrium unfolding of the retinoid X receptor ligand binding domain and characterization of an unfolding intermediate. Biophys Chem.  Apr;141(1):1-10.



Stevens JF, Reed RL, Morré JT. (2008). Characterization of phytoecdysteroid glycosides in Meadowfoam (Limnanthes alba) seed meal by positive and negative ion LC-MS/MS. J Agric Food Chem.  Jun 11;56(11):3945-52.

Kuiper HC, Miranda CL, Sowell JD, Stevens JF. (2008).  Mercapturic acid conjugates of 4-hydroxy-2-nonenal and 4-oxo-2-nonenal metabolites are in vivo markers of oxidative stress.J Biol Chem.  Jun 20;283(25):17131-8.

Stevens JF, Maier CS. (2008).  Acrolein: sources, metabolism, and biomolecular interactions relevant to human health and disease. Mol Nutr Food Res.  Jan;52(1):7-25.

Chung WG, Miranda CL, Maier CS. (2008). Detection of carbonyl-modified proteins in interfibrillar rat mitochondria using N'-aminooxymethylcarbonylhydrazino-D-biotin as an aldehyde/keto-reactive probe in combination with Western blot analysis and tandem mass spectrometry. Electrophoresis.  Mar;29(6):1317-24.

Chung WG, Maier CS. (2008). Identification and characterization of oxylipid-protein and peptide conjugates by mass spectrometry. Curr Protoc Toxicol. Chapter 17:Unit 17.9.

Voinov VG, Deinzer ML, Barofsky DF. (2008). Electron capture dissociation in a linear radiofrequency-free magnetic cell. Rapid Commun Mass Spectrom.  Oct;22(19):3087-8

Henderson MC, Siddens LK, Morré JT, Krueger SK, Williams DE. (2008).  Metabolism of the anti-tuberculosis drug ethionamide by mouse and human FMO1, FMO2 and FMO3 and mouse and human lung microsomes. Toxicol Appl Pharmacol.  Dec 15;233(3):420-7.