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Mass Spectrometry Facilities and Services Core Publications

2000

LARAMÉE, J.A., CODY, R.B. and DEINZER, M.L. (2000). Discrete energy electron capture negative ion mass spectrometry. In Encyclopedia of Analytical Chemistry (R.A. Meyers, ed.), pp. 11651–11679. John Wiley and Sons Ltd., Chichester.

MAEDA, D.Y., ISHMAEL, J.E., MURRAY, T.F. and ALDRICH, J.V. (2000). Synthesis and evaluation of N,N-dialkyl enkephalin-based affinity labels for ò opioid receptors. J. Med. Chem. 43, 3941–3948.

MAIER, C.S., YAN, X., HARDER, M.E., SCHIMERLIK, M.I., DEINZER, M.L., PAŠA-TOLIC, L. and SMITH, R.D. (2000). Electrospray ionization Fourier transform ion cyclotron resonance mass spectrometric analysis of the recombinant human macrophage colony stimulating factor ß and derivatives. J. Am. Soc. Mass Spectrom. 11, 237–243.

MILLIGAN, K.E., MARQUEZ, B., WILLIAMSON, R.T., DAVIES-COLEMAN, M. and GERWICK, W.H. (2000). Two new malyngamides from a Madagascan Lyngbya majuscula. J. Nat. Prod. 63, 965–968.

MILLIGAN, K.E., MARQUEZ, B., WILLIAMSON, R.T. and GERWICK, W.H. (2000). Lyngbyabellin B, a toxic and antifungal secondary metabolite from the marine cyanobacterium Lyngbya majuscula. J. Nat. Prod. 63, 1440–1443.

MOODY, C.A. and FIELD, J.A. (2000). Perfluorinated surfactants and the environmental implications of their use in fire-fighting foams. Environ. Sci. Technol. 34, 3864–3869.

SITACHITTA, N., WILLIAMSON, R.T. and GERWICK, W.H. (2000). Yanucamides A and B, two new depsipeptides from an assemblage of the marine cyanobacteria Lyngbya majuscula and Schizothrix species. J. Nat. Prod. 63, 197–200.

SITACHITTA, N., MÁRQUEZ, B.L., WILLIAMSON, R.T. ROSSI, J., ROBERTS, M.A. GERWICK, W.H., NGUYEN V.-A. and WILLIS, C.L. (2000). Biosynthetic pathway and origin of the chlorinated methyl group in barbamide and dechlorobarbamide, metabolites from the marine cyanobacterium Lyngbya majuscula. Tetrahedron 56, 9103–9113.

SKREDE, G., WROLSTAD, R.E. and DURST, R.W. (2000). Changes in anthocyanins and polyphenolics during juice processing of highbush blueberries (Vaccinium corymbosum L.). Sens. Nutr. Qual. Food 65, 357–364.

STEVENS, J.F., TAYLOR, A.W., NICKERSON, G.B., IVANCIC, M., HENNING, J., HAUNOLD, A. and DEINZER, M.L. (2000). Prenylflavonoid variation in Humulus lupulus: distribution and taxonomic significance of xanthogalenol and 4'-O-methylxanthohumol. Phytochemistry 53, 759–775.

SUNG, J.S. and MOSBAUGH, D.W. (2000). Escherichia coli double-strand uracil-DNA glycosylase: Involvement in uracil-mediated DNA base excision repair and stimulation of activity by endonuclease IV. Biochemistry 39, 10224–10235.

TAN, L.T., OKINO, T. and GERWICK, W.H. (2000). Hermitamides A and B, toxic malyngamide-type natural products from the marine cyanobacterium Lyngbya majuscula. J. Nat. Prod. 63, 952–955.

TAN, L.T., WILLIAMSON, R.T. and GERWICK, W.H. (2000). cis cis- and trans,trans-Ceratospongamide, new bioactive cyclic heptapeptides from the Indonesian red alga Ceratodictyon spongiosum and symbiotic sponge Sigmadocia symbiotica. J. Org. Chem. 65, 419–425.

WU, M., OKINO, T., NOGLE, L.M., MARQUEZ, B.L., WILLIAMSON, R.T., SITACHITTA, N., BERMAN, F.W., MURRAY, T.F., MCGOUGH, K., JACOBS, R., COLSEN, K., ASANO, T., YOKOKAWA, F., SHIOIRI, T. and GERWICK, W.H. (2000). Structure, synthesis, and biological properties of kalkitoxin, a novel neurotoxin from the marine cyanobacterium Lyngbya majuscula. J. Am. Chem. Soc. 122, 12041–12042.

YANG, Y.-H., MIRANDA, C. L., HENDERSON, M.C., WANG-BUHLER, J.-L. and BUHLER, D.R. (2000). Heterologous expression of CYP2K1 and identification of the expressed protein (BV-CYP2K1) as lauric acid (w-1) hydroxylase and aflatoxin B1 exo-epoxidase. Drug Metab. Dispos. 28, 1279–1283.


2001

DONEANU, C.E., GRIFFIN, D.A., BAROFSKY, E.L. and BAROFSKY, D.F. (2001). An exponential dilution gradient system for nanoscale liquid chromatography in combination with MALDI or nano-ESI mass spectrometry for proteolytic digests. J. Am. Soc. Mass Spectrom. 12, 1205–1213.

KIM, M.-Y., MAIER, C.S., REED, D.J. and DEINZER, M.L. (2001). Site-specific amide hydrogen/deuterium exchange in E. coli thioredoxins measured by electrospray ionization mass spectrometry. J. Am. Chem. Soc. 123, 9860–9866.

KIM, M.-Y., MAIER, C.S., REED, D.J., HO, P.S. and DEINZER, M.L. (2001). Intramolecular interactions in chemically modified Escherichia coli thioredoxin monitored by hydrogen/deuterium exchange and electrospray ionization mass spectrometry. Biochemistry 40, 14413–14421.

LAURIDSEN, C., LEONARD, S.W., GRIFFIN, D.A., LIEBLER, D.C., MCCLURE, T.D. and TRABER, M.G. (2001). Quantitative analysis by liquid chromatography–tandem mass spectrometry of deuterium-labeled and unlabeled vitamin E in biological samples. Anal. Biochem. 289, 89–95.

NOGLE, L.M., OKINO, T. and GERWICK, W.H. (2001). Antillatoxin B, a neurotoxic lipopeptide from the marine cyanobacterium Lyngbya majuscula. J. Nat. Prod. 64, 983–985.

NOGLE, L.M., WILLIAMSON, R.T. and GERWICK, W.H. (2001). Somamides A and B, two new depsipeptide analogues of dolastatin 13 from a Fijian cyanobacterial assemblage of Lyngbya majuscule and Schizothrix species. J. Nat. Prod. 64, 716–719.

PAZMINO-DURÁN, E.A., GIUSTI, M.M., WROLSTAD, R.E. and GLÓRIA, M.B.A. (2001). Anthocyanins from banana bracts (Musa X paradisiacal) as potential food colorants. Food Chem. 73, 327–332.

RODRIGUEZ, R.J., MIRANDA, C.L., STEVENS, J.F., DEINZER, M.L. and BUHLER, D.R. (2001). Influence of prenylated and non-prenylated flavonoids on liver microsomal lipid peroxidation and oxidative injury in rat hepatocytes. Food Chem. Toxicol. 39, 437–445.

SANTANA-RIOS, G., ORNER, G.A., AMANTANA, A., PROVOST, C., WU, S-Y. and DASHWOOD, R.H. (2001) Potent antimutagenic activity of white tea in comparison with green tea in the Salmonella assay. Mutat. Res. 495, 61–74.

THOMAS, C., WILL, Y., SCHOENBERG, S.L., SANDERLIN, D. and REED, D.J. (2001). Conjugative metabolism of 1,2-dibromoethane in mitochondria: disruption of oxidative phosphorylation and alkylation of mitochondrial DNA. Biochem. Pharmacol. 61, 595–603.

WROLSTAD, R.E., GIUSTI, M.M., RODRIGUEZ-SAONA, L.E. and DURST, R.W. (2001). Anthocyanins from radishes and red-fleshed potatoes. In Chemistry and Physiology of Selected Food Colorants (J.M. Ames and T. Hofmann, eds.), ACS Symposium Series 775, Ch. 5, pp. 66–89. American Chemical Society, Washington D.C.

YILMAZER, M., STEVENS, J.F. and BUHLER, D.R. (2001). In vitro glucuronidation of xanthohumol, a flavonoid in hop and beer, by rat and human liver microsomes. FEBS Lett. 491, 252–256.

YILMAZER, M., STEVENS, J.F., DEINZER, M.L. and BUHLER, D.R. (2001). In vitro biotransformation of xanthohumol, a flavonoid from hops (Humulus lupulus), by rat liver microsomes. Drug Metab. Dispos. 29, 223–231.

ZHANG, Y.H., YAN, X., MAIER, C.S., SCHIMERLIK, M.I. and DEINZER, M.L. (2001). Structural comparison of recombinant human macrophage colony stimulating factor ß and a partially reduced derivative using hydrogen deuterium exchange and electrospray ionization mass spectrometry. Protein Sci. 10, 2336–2345.


2002

BAROFSKY, D.F. and CHEN, T.-F. (2002). Peptide sequencing promoted by N-terminal derivatization. In Mass Spectrometry and Hyphenated Techniques in Neuropeptide Research (J. Silberring and R. Ekman, eds.), pp. 345–373. John Wiley & Sons, New York.

CARTER, R.G., BOURLAND, T.C. and GRAVES, D.E. (2002). Synthesis of the ABC ring system of azaspiracid. 1. Effect of D ring truncation on bis-spirocyclization. Org. Lett. 4, 2177–2179.

CARTER, R.G., GRAVES, D.E., GRONEMEYER, M.A. and TSCHUMPER, G.S. (2002). Synthesis of the ABC ring system of azaspiracid. 2. A systematic study into the effect of C16 and C17 substitution on bis-spirocyclization. Org. Lett. 4, 2181–2184.

GARZÓN, G.A. and WROLSTAD, R.E. (2002). Comparison of the stability of pelargonidin-based anthocyanins in strawberry juice and concentrate. Food Chem. Toxicol. 67, 1288–1299.

KIM, M.-Y., MAIER, C.S., REED, D.J. and DEINZER, M.L. (2002). Conformational changes in chemically modified Escherichia coli thioredoxin monitored by H/D exchange and electrospray ionization mass spectrometry. Protein Sci. 11, 1320–1329.

LEE, J., DURST, R.W. and WROLSTAD. (2002). Impact of juice processing on blueberry anthocyanins and polyphenolics: Comparison of two pretreatments. Food Chem. Toxicol. 67, 1660–1667.

MARQUEZ, B.L., WATTS, K.S., YOKOCHI, A., ROBERTS, M.A., VERDIER-PINARD, P., JIMENEZ, J.I., HAMEL, E., SCHEUER, P.J. and GERWICK, W.H. (2002). Structure and absolute stereochemistry of hectochlorin, a potent stimulator of actin assembly. J. Nat. Prod. 65, 866–871.

NOGLE, L.M. and GERWICK, W.H. (2002). Isolation of four new cyclic depsipeptides, antanapeptins A–D, and dolastatin 16 from a Madagascan collection of Lyngbya mujuscula. J. Nat. Prod. 65, 21–24.

NOGLE, L.M. and GERWICK, W.H. (2002). Somocystinamide A, a novel cytotoxic disulfide dimmer from a Fijian marine cyanobacterial mixed assemblage. Org. Lett. 4, 1095–1098.

PETERSON, V.J., BAROFSKY, E., DEINZER, M.L., DAWSON, M.I., FENG, K.-C., ZHANG, X.-K., MADDURU, M.R. and LEID, M. (2002). Mass-spectrometric analysis of agonist-induced retinoic acid receptor y conformational change. Biochem. J. 362, 173–181.

STEVENS, J.F., MIRANDA, C.L., WOLTHERS, K.R., SCHIMERLIK, M., DEINZER, M.L. and BUHLER, D.R. (2002). Identification and in vitro biological activities of hop proanthocyanidins: Inhibition of nNOS activity and scavenging of reactive nitrogen species. J. Agric. Food Chem. 50, 3435–3443.

STINTZING, F.C., STINTZING, A.S., CARLE, R. and WROLSTAD, R.E. (2002). A novel zwitterionic anthocyanin from evergreen blackberry (Rubus laciniatus Willd.). J. Agric. Food Chem. 50, 396–399.

TAN, L.T., MARQUEZ, B.L. and GERWICK, W.H. (2002). Lyngbouilloside, a novel glycosidic macrolide from the marine cyanobacterium Lyngbya bouillonii. J. Nat. Prod. 65, 925–928.

WILLIAMSON, R.T., BOULANGER, A., VULPANOVICI, A., ROBERTS, M.A. and GERWICK, W.H. (2002). Structure and absolute stereochemistry of phormidolide, a new toxic metabolite from the marine cyanobacterium Phormidium sp. J. Org. Chem. 67, 7927–7936.

YAN, X., ZHANG, H., WATSON, J., SCHIMERLIK, M.I. and DEINZER, M.L. (2002). Hydrogen/deuterium exchange and mass spectrometric analysis of a protein containing multiple disulfide bonds: Solution structure of recombinant macrophage colony stimulating factor-beta (rhM-CSFß). Protein Sci. 11, 2113–2124.

YOO, H.-D., KETCHUM, S.O., FRANCE, D., BAIR, K. and GERWICK, W.H. (2002). Vidalenolone, a novel phenolic metabolite from the tropical red alga Vidalia sp. J. Nat. Prod. 65, 51–53.

ZHANG, Y.H., YAN, X., MAIER, C.S., SCHIMERLIK, M.I. and DEINZER, M.L. (2002). Conformational analysis of intermediates involved in the in vitro folding pathways of recombinant human macrophage colony stimulating factor ß by sulfhydryl group trapping and hydrogen/deuterium pulsed labeling. Biochemistry 41, 15495–15504.


2003

CARTER, R.G., BOURLAND, T.C., ZHOU, X.T. and GRONEMEYER, M.A. (2003). Controlling influences in bisspiroketal formation: Synthesis of the ABC ring system of azaspiracid. Tetrahedron 59, 8963–8974.

CORSI, S.R., ZITOMER, D.H., FIELD, J.A. and CANCILLA, D. (2003). Nonylphenol ethoxylates and other additives in aircraft deicers, anti-icers, and water receiving airport runoff. Environ. Sci. Technol. 37, 4031–4037.

FIELD, J.A., SCHULTZ, M. and BAROFSKY, D. (2003). Fluorinated alkyl surfactants in groundwater and wastewater. Chimia 57, 22–24.

FIELD, J.A., SCHULTZ, M. and BAROFSKY, D. (2003). Identifying hydrocarbon and fluorocarbon surfactants in specialty chemical formulations of environmental interest by fast atom bombardment/mass spectrometry. Chimia 57, 556–560.

MCPHAIL, K.L. and GERWICK, W.H. (2003). Three new malyngamides from a Papua New Guinea collection of the marine cyanobacterium Lyngbya majuscule. J. Nat. Prod. 66, 132–135.

MOODY, C.A., HEBERT, G.N., STRAUSS, S.H. and FIELD, J.A. (2003) Occurrence and persistence of perfluorooctanesulfonate and other perfluorinated surfactants in groundwater at a fire-training area at Wurtsmith Air Force Base. J. Environ. Monit. 5, 341–345.

NAPULI, A.J., ALZHANOVA, D.V., DONEANU, C.E., BAROFSKY, D.F., KOONIN, E.V. and DOLJA, V.V. (2003). The 64-kilodalton capsid protein homolog of Beet Yellows Virus is required for assembly of virion tails. J. Virol. 77, 2377–2384.

NOGLE, L.M., MARQUEZ, B.L. and GERWICK, W.H. (2003). Wesakazole, a novel cyclic dodecapeptide from a Papua New Guinea Lyngbya majuscule. Org. Lett. 5, 3–6.

NOGLE, L.M. and GERWICK, W.H. (2003). Diverse secondary metabolites from a Puerto Rican collection of Lyngbya majuscule. J. Nat. Prod. 66, 217–220.

SCHULTZ, M.M., BAROFSKY, D.F. and FIELD, J.A. (2003). Fluorinated alkyl surfactants. Environ. Eng. Sci. 20, 487–501.

STEVENS, J.F., MIRANDA, C.L., FREI, B. and BUHLER, D.R. (2003). Inhibition of peroxynitrite-mediated LDL oxidation by prenylated flavonoids: The a,ß-unsaturated keto functionality of 2'-hydroxychalcones as a novel antioxidant pharmacophore. Chem. Res. Toxicol. 16, 1277–1286.

TAN, L.T., SITACHITTA, N. and GERWICK, W.H. (2003). The guineamides, novel cyclic depsipeptides from a Papua New Guinea collection of the marine cyanobacterium Lyngbya majuscula. J. Nat. Prod. 66, 764–771.

TAYLOR, A.W., BAROFSKY, E., KENNEDY, J.A. and DEINZER, M.L. (2003). Hop (Humulus lupulus L.) proanthocyanidins characterized by mass spectrometry, acid catalysis, and gel permeation chromatography. J. Agric. Food Chem. 51, 4101–4110.

VOINOV, V.G., VASIL'EV, Y.V., MORRÉ, J., BAROFSKY, D.F., DEINZER, M.L., GONIN, M., EGAN, T.F. and FÜHRER, K. (2003). A resonant electron capute time-of-flight MS with trochoidal electron monochromator. Anal. Chem. 75, 3001–3009.

WOLLENWEBER, E., STEVENS, J.F., DORR, M. and ROZEFELDS, A.C. (2003). Taxonomic significance of flavonoid variation in temperate species of Nothofagus. Phytochemistry 62, 1125–1131.

WOLLENWEBER, E., STEVENS, J.F., KLIMO, K., KNAUFT, J., FRANK, N. and GERHAÜSER, C. (2003). Cancer chemopreventive in vitro activities of isoflavones isolated from Iris germanica. Planta Medica 69, 15-20.


2004


ALUMBAUGH, R.E. GIEG, L.M. and FIELD, J.A. (2004). Determination of alkylbenzene metabolites in groundwater by solid phase extraction and liquid chromatography-tandem mass spectrometry. J. Chrom. A 1042, 89–97.

BAUMAN, A.T., MALENCIK, D.A., BAROFSKY, D.F., BAROFSKY, E., ANDERSON, S.R. and WHANGER, P.D. (2004). Selective production of rat mutant selenoprotein W with and without bound glutathione. Biochem. Biophys. Res. Commun. 313, 308–313.

DONEANU, C.E., GAFKEN, P.R., BENNETT, S.E. and BAROFSKY, D.F. (2004). Mass spectrometry of UV-cross-linked protein—nucleic acid complexes: Identification of amino acid residues in the single-stranded DNA-binding domain of human replication protein A. Anal. Chem. 76, 5667–5676.

EDWARDS, D.J., MARQUEZ, B.L., NOGLE, L.M., MCPHAIL, K., GOEGER, D.E., ROBERTS, M.A. and GERWICK, W.H. (2004). Structure and biosynthesis of the Jamaicamides, new mixed polyketide-peptide neurotoxins from the marine cyanobacterium Lyngbya majuscula. Chem. Biol. 11, 817–833.

FARR, C.D., GAFKEN, P.R., NORBECK, A.D., DONEANU, C.E., STAPELS, M.D., BAROFSKY, D.F., MINAMI, M. and SAUGSTAD, J.A. (2004). Proteomic analysis of native metabotropic glutamate receptor 5 protein complexes reveals novel molecular constituents. J. Neurochem. 91, 438–450.

HARDER, M.E., DEINZER, M.L., LEID, M.E., and SCHIMERLIK, M.I. (2004). Global analysis of three-state protein unfolding data. Protein Sci. 13:2207-2222.

HELD, M.A., TAN, L., KAMYAB, A., HARE, M., SHPAK, E. and KIELISZEWSKI, M.J. (2004). Di-isodityrosine is the intermolecular cross-link of isodityrosine-rich extensin analogs cross-linked in vitro. J. Biol. Chem. 279, 55474–55482.

HENDERSON, M.C., KRUEGER, S.K., SIDDENS, L.K., STEVENS, J.F. and WILLIAMS, D.E. (2004) S-oxygenation of the thioether organophosphate insecticides phorate and disulfoton by human lung flavin-containing monooxygenase 2. Biochem. Pharmacol. 68, 959–967.

HENDERSON, M.C., KRUEGER, S.K., STEVENS, J.F., and WILLIAMS, D.E. (2004). Human flavin-containing monooxygenase form 2 S-oxygenation: sulfenic acid formation from thioureas and oxidation of glutathione. Chem. Res. Toxicol. 17, 633–640.

KAETZEL, R.S., STAPELS, M.D., BAROFSKY, D.F. and REED, D.J. (2004). Alkylation of protein disulfide isomerase by the episulfonium ion derived from the glutathione conjugate of 1,2-dichloroethane and mass spectrometric characterization of the adducts. Arch. Biochem Biophys. 423, 136–147.

KILLIN, R.K., SIMONICH, S.L., JAFFE, D.A., DEFOREST, C.L. and WILSON, G.R. (2004). Transpacific and regional atmospheric transport of anthropogenic semivolatile organic compounds to Cheeka Peak Observatory during the spring of 2002. J. Geophys. Res. 109, D23S15 (11 pages).

LEINWEBER, B., BAROFSKY, E., BAROFSKY, D., ERMILOV, V., NYLIN, K. and BECKMAN, J.S. (2004). Aggregation of ALS mutant superoxide dismutase expressed in Escherichia coli. Free Radic. Biol. Med. 36, 911–918.

MCPHAIL, K.L., FRANCE, D., CORNELL-KENNON, S. and GERWICK, W.H. (2004). Peyssonenynes A and B, novel enediyne oxylipins with DNA methyl transferase inhibitory activity from the red marine alga Peyssonnelia caulifera. J. Nat. Prod. 67, 1010–1013.

NYARKO, A., HARE, M., HAYS, T.S. and BARBAR, E. (2004). The intermediate chain of cytoplasmic dynein is partially disordered and gains structure upon binding to light-chain LC8. Biochemistry 43, 15595–15603.

PEHAR, M., CASSINA, P., VARGAS, M.R., CASTELLANOS, R., VIERA, L., BECKMAN, J.S., ESTEVEZ, A.G. and BARBEITO, L. (2004). Astrocytic production of nerve growth factor in motor neuron apoptosis: Implications for amyotrophic lateral sclerosis. J. Neurochem. 89, 464–473.

POGULAY, A.V., ABZALIMOV, R.R., NASIBULLAEV, S.K., LOBACH, A.S., DREWELL, T. and VASIL'EV, Y.V. (2004). Ionization energies of the C60 fullerene and its hydrogenated derivatives C60H18 C60H36 determined by electron ionization. Int. J. Mass Spectrom. 233, 165–172.

ROBINSON, K.M., MORRÉ, J.T. and BECKMAN, J.S. (2004). Triuret: A novel product of peroxynitrite-mediated oxidation of urate. Arch. Biochem. Biophys. 423, 213–217.

SCHULTZ, M.M., BAROFSKY, D.F. and FIELD, J.A. (2004). Quantitative determination of fluorotelomer sulfonates in groundwater by LC MS/MS. Environ. Sci. Technol. 38, 1828–1835.

SOWELL, J., FREI, B., and STEVENS, J.F. (2004) Vitamin C conjugates of genotoxic lipid peroxidation products: structural characterization and detection in human plasma. Proc. Natl. Acad. Sci. U. S. A. 101, 17964-17969.

STAPELS, M.D. and BAROFSKY, D.F. (2004). Complementary use of MALDI and ESI for the HPLC-MS/MS analysis of DNA-binding proteins. Anal. Chem. 76, 5423–5430.

STAPELS, M.D., CHO, J.-C., GIOVANNONI, S.J. and BAROFSKY, D.F. (2004). Proteomic analysis of novel marine bacteria using MALDI and ESI mass spectrometry. J. Biomol. Tech. 15, 191–198.

TRIMPIN, S., MIXON, A.E., STAPELS, M.D., KIM, M.-Y., SPENCER, P.S. and DEINZER, M.L. (2004). Identification of endogenous phosphorylation sites of bovine medium and low molecular weight neurofilament proteins by tandem mass spectrometry. Biochemistry 43, 2091–2105.

VOINOV, V.G., VASIL'EV, Y.V., JI, H., FIGARD, B., MORRÉ, J., EGAN, T.F., BAROFSKY, D.F. and DEINZER, M.L. (2004). A gas chromatograph/resonant electron capture-TOF mass spectrometer for four dimensions of negative ion analytical information. Anal. Chem. 76, 2951–2957.

WILLIAMSON, R.T., SINGH, I.P. and GERWICK, W.H. (2004). Taveuniamides: New chlorinated toxins from a mixed assemblage of marine cyanobacteria. Tetrahedron 60, 7025–7033.

YAN, X., BRODERICK, D., LEID, M.E., SCHIMERLIK, M.I. and DEINZER, M.L. (2004). Dynamics and ligand-induced solvent accessibility changes in human retinoid X receptor homodimer determined by hydrogen-deuterium exchange and mass spectrometry. Biochemistry 43, 909–917.

YAN, X., WATSON, J., HO, P.S. and DEINZER, M.L. (2004). Mass spectrometric approaches using electrospray ionization charge states and hydrogen-deuterium exchange for determining protein structures and their conformational changes. Mol. Cell. Proteom. 3.1, 10–23.


2005

ACKERMAN, L.K., WILSON, G.R and SIMONICH, S.L. (2005). Quantitative analysis of 39 polybrominated diphenyl ethers by isotope dilution GC/low-resolution MS. Anal. Chem. 77, 1979–1987.

GIOVANNONI, S.J., BIBBS, L., CHO, J.C., STAPELS, M.D., DESIDERIO, R., VERGIN, K.L., RAPPE, M.S., LANEY, S., WILHELM, L.J., TRIPP, H.J., MATHUR, E.J., BAROFSKY, D.F. (2005). Proteorhodopsin in the ubiquitous marine bacterium SAR11. Nature. 438, 82-85.

HAN, B., GOEGER, D., MAIER, C.S. and GERWICK, W.H. (2005). The Wewakpeptins, cyclic depsipeptides from Papua New Guinea collection of the marine cyanobacterium Lyngbya semiplena. J. Org. Chem. 70, 3133–3139.

MAHADEVAN, B., MATA, J.E., ALBERSHARDT, D.J., STEVENS, J.F., PEREIRA, C.B., RODRIGUEZ-PROTEAU, R. and BAIRD, W.M. (2005). The effects of red raspberry extract on PAH transport across Calu-3 cell monolayer, an in vitro cell model. Int. J. Cancer Prev. 2, 129-141.

MAIER, C.S. and DEINZER, M.L. (2005). Protein conformations, interactions, and H/D exchange. Methods Enzymol. 402, 312-360.

MARLEY, K., MOONEY, D.T., CLARK-SCANNELL G., TONG, T.T., WATSON, J., HAGEN, T.M., STEVENS, J.F. and MAIER, C.S. (2005). Mass tagging approach for mitochondrial thiol proteins. J Proteome Res. 4, 1403-1412.

MUSAFIA-JEKNIC, T., MAHADEVAN, B., PEREIRA, C., and BAIRD, W.M. (2005). Long-term effects of a standardized complex mixture of urban dust particulate on the metabolic activation of carcinogenic polycyclic aromatic hydrocarbons in human cells in culture. Toxicol Sci.88, 358-366.

ROBINSON, K.M. and BECKMAN, J.S. (2005). Synthesis of peroxynitrite from nitrite and hydrogen peroxide. Methods Enzymol. 396, 207–214.

SOWELL, J., CONWAY, H.M., BRUNO, R.S., TRABER, M.G., FREI, B., and STEVENS, J.F. (2005). Ascorbylated 4-hydroxy-2-nonenal as a potential biomarker of oxidative stress response. J. Chromatogr. B Analyt. Technol. Biomed. Life Sci. 827, 139-145.

TRIMPIN, S. and DEINZER, M.L. (2005). Solvent-free MALDI-MS for the analysis of biological samples via a mini-ball mill approach. J. Am. Soc. Mass Spectrom. 16, 542–547.

TRIMPIN, S. and DEINZER, M.L. (2005) Solvent-free mass spectrometry for hydrophobic peptide sequence analysis and protein conformation studies. Biotechniques. 39, 799-805.


2006

CHAVEZ, J., WU, J., HAN, B., CHUNG, W.-G., and MAIER, C.S. (2006) New role for an old probe: Affinity labeling of oxylipid protein conjugates by N’-aminooxymethylcarbonylhydrazino d-biotin. Anal. Chem. 78, 6847-6854.

LI, H.J., and DEINZER, M.L. (2006) Structural identification and distribution of proanthocyanidins in thirteen different hops. J. Agric. Food Chem. 54, 4048-4056.

ROBINSON, K.M., JANES, M.S., PEHAR, M., MONETTE, J.S., ROSS, M.F., HAGEN, T.M., MURPHY, M.P., BECKMAN, J.S. (2006). Selective fluorescent imaging of superoxide in vivo using ethidium-based probes. Proc. Natl. Acad. Sci. U.S.A. 103: 15038-43.

SCHULTZ, M.M., BAROFSKY, D.F., and FIELD, J.A. (2006). Quantitative determination of fluorinated alkyl substances by large-volume-injection liquid chromatography tandem mass spectrometry-characterization of municipal wastewaters. Environ. Sci. Technol. 40, 289-295.

SCHULTZ, M.M., HIGGINS, C.P., HUSET, C.A., LUTHY, R.G., BAROFSKY, D.F., FIELD, J.A. (2006). Fluorochemical mass flows in a municipal wastewater treatment facility.  Envir. Sci. Technol. 40: 7350-7.

VASIL'EV, Y.V., FIGARD, B.J., VOINOV, V.G., BAROFSKY, D.F. and DEINZER, M.L. (2006). Resonant electron capture by some amino acids and their methyl esters. J. Am. Chem. Soc. 128, 5506–5515.

WANG-BUHLER, J.L., LEE, S.J., CHUNG, W.G., STEVENS, J.F., TSENG, H.P., HSEU, T.H., HU, C.H., WESTERFIELD, M., YANG, Y.H., MIRANDA, C.L. and BUHLER, D.R. (2006). CYP2K6 from zebrafish (Danio rerio): Cloning, mapping, developmental/tissue expression, and aflatoxin B1 activation by baculovirus expressed enzyme. Comp. Biochem. Physiol., Part C 140, 207-219.

YAN, X., DEINZER, M.L., SCHIMERLIK, M.I., BRODERICK, D., LEID, M.E., and DAWSON, M.I. (2006). Investigation of ligand interactions with human RXRalpha by hydrogen/deuterium exchange and mass spectrometry. J. Am. Soc. Mass Spectrom. 17: 1510-17.

YODER, J.D., CHEN, T.S., GAGNIER, C.R., VEMULAPALLI, S., MAIER, C.S., and HRUBY, D.H. (2006). Pox proteomics: Mass spectrometry analysis and identification of Vaccinia virion proteins. Virol. J. 3: 10-19.

2006 (in progress)

FULL, S.J., WATSON, J., DEINZER, M.L., HO, P.S., and GREENWOOD, J.A. (2006). Phosphointositide binding regulates alpha-actinin CH2 domain structure: Analysis by hydrogen/deuterium exchange mass spectrometry. Biochem. (submitted).

VASIL'EV, Y.V., FIGARD, B.J., and DEINZER, M.L. (2006). Resonant electron capture mass spectrometry. Encyclopedia of Mass Spectrometry: Molecular Ionization. Vol. 6 (in press).

2007

BYTHELL, B.J., BAROFSKY, D.F., PINGITORE, F., POLCE, M.J., WANG, P., WESDEMIOTIS, C., and PAIZS, B. (2007). Backbone cleavages and sequential loss of carbon monoxide and ammonia from protonated AGG: a combined tandem mass spectrometry, isotope labeling, and theoretical study. J. Am. Soc. Mass Spectrom. 18: 1291-303.

CHO, J.C., STAPELS, M.D., MORRIS, R.M., VERGIN, K.L., SCHWALBACH, M.S., GIVAN, S.A., BAROFSKY, D.F., and GIOVANNONI, S.J. (2007). Polyphyletic photosynthetic reaction centre genes in oligotrophic marine Gammaproteobacteria. Environ. Microbiol. 9: 1456-63.

HAN, B., STEVENS, J.F., and MAIER, C.S. (2007). Design, synthesis, and application of a hydrazide-functionalized isotope-coded affinity tag for the quantification of oxylipid-protein conjugates. Anal. Chem. 79: 2822-6.

ISHMAEL, J.E., SAFIC, M., AMPARAN, D., VOGEL, W.K., PHAM, T., MARLEY, K., FILTZ, T.M., and MAIER, C.S. (2007). Nonmuscle myosins II-B and Va are components of detergent-resistant membrane skeletons derived from mouse forebrain. Brain Res. 1143: 46-59.

LI, H.J., and DEINZER, M.L. (2007). Tamdem mass spectrometry for sequencing proanthocyanidins. Anal. Chem. 79: 1739-48.

JI, H., MORRE, J., VOINOV, V.G., DEINZER, M.L., and BAROFSKY, D.F. (2007). Charge-remote metastable ion decomposition of free fatty acids under FAB MS: Evidence for biradical ion structures. Anal. Chem. 79: 2822-6.

JI, H., VOINOV, V.G., DEINZER, M.L., and BAROFSKY, D.F. (2006). Distinguishing between cis/trans isomers of monounsaturated fatty acids by FAB MS. Anal. Chem.79: 71-8.

SANTACRUZ, C.P., HAKANSSON, P., BAROFSKY, D.F., and PIYADASA, C.K. (2007). A constant-momentum/energy-selector time-of-flight mass spectrometer. J. Am. Soc. Mass Spectrom. 18: 92-101.

TRIMPIN, S., and DEINZER, M.L. (2007). Solvent-free MALDI-MS for the analysis of ß-amyloid peptides via the mini-ball mill approach: Qualitative and quantitative advances. J. Am. Soc. Mass Spectrom. 18: 1533-43.

TRIMPIN, S., and DEINZER, M.L. (2006). Solvent-free MALDI-MS for the analysis of a membrane protein via the mini-ball mill approach: A case study of Bacteriorhodopsin. Anal. Chem. 79: 71-8.


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Last updated September 2007